Mu, X., Fu,X., Sun, H., Beremand, P.D., Thomas, T.L. and Klein, W.H. 2005. Agene network downstream of transcription factor Math5 regulates retinal progenitor cell competence and ganglion cell fate. Developmental Biology, In press.
Liang, S., Zhao, S., Mu., X., Thomas, T. L. and Klein, W.H. 2004. Novel retinalgenes discovered by mining the mouse embryonic RetinalExpress database. Molecular Vision, 10: 773-786.
Bailey, M.J., Beremand, P.D., Hammer, R., Reidel, E., Thomas, T.L. and Cassone,V.M. 2004. Transcriptional profiling of circadian patterns of mRNA expression inthe chick retina. J. Biol. Chem., 279, 52247-52254.
Mu, X., Beremand, P.D., Zhao, S., Pershad, R., Sun, H., Scarpa, A., Liang, S., Thomas, T.L., Klein, W.H. 2004. Discrete gene sets depend on POU transcription factor Brn3b/Brn-3.2/POU4f2 for their expression in the mouse embryonic retina. Development 131, 1197-1210.
Ebbole, D.J., Yuan, J., Thon, M., Pan, H., Bhatterai, E., Thomas, T. and Dean, R. 2004. Gene discovery and gene expression in the rice blast fungus, Magnaporthe grisea: Analysis of expressed sequence tags. Molecular Plant-Microbe Interactions. 17, 1337-1347.
Bailey, M.J., Beremand, P.D., Hammer, R., Bell-Pedersen, D., Thomas, T.L. and Cassone, V.M. (2003) Transcriptional profiling of the chick pineal gland, a photoreceptive circadian oscillator and pacemaker. Molecular Endocrinology 17, 2084-2095.
Correa, A., Lewis, Z.A., Greene, A.V., March, I.J., Gomer, R.H., Bell-Pedersen,D. (2003). Multiple oscillators regulate circadian gene expression in Neurospora. Proc. Natl. Acad. Sci. USA, 100, 13597-13602.
Lewis, Z.A., Correa, A., Schwerdtfeger, C., Link, K.L., Xie, X., Gomer, R.H., Thomas, T., Ebbole, D.J. and Bell-Pedersen, D. 2002. Overexpression of WHITE COLLAR-1(WC-1) activates circadian clock-associated genes, but is not sufficient to induce light-regulated gene expression in Neurospora crassa. Molecular Microbiology, 45: 917-931.
Chuang, H.-W.,Hsieh, T.-F., Duval, M and Thomas, T.L. 2002. Genomic analysis ofArabidopsis gene expression in response to a systemic fungicide. In Genomics ofPlants and Fungi, (eds. R.A. Prade and H.J.Bohnert), Marcel Dekker, Inc., New York. pp 237-253.
Mu, X., Zhao, S., Pershad, R., Hsieh, T.-F., Scarpa, A., Wang, S.W., White, A.,Beremand, P.D., Thomas, T. L., Gan, L. and Klein, W.H. 2001. Gene expression inthe developing mouse retina by EST sequencing and microarray analysis. NucleicAcids Research, 24, 4983-4993.
Chen, I., Hsieh, T., Thomas, T.L. and Safe, S. 2001. Identification of estrogen-induced genes downregulated by AhR agonists in MCF-7 breast cancer cells usingsuppression subtractive hybridization. Gene, 262, 207-214.
Bell-Pedersen, D., Cassone, V.M., Earnest, D.J., Golden, S.S., Hardin, P.E., Thomas, T.L., and Zoran, M.J. Multiple oscillators regulate rhythmicity in organisms from bacteria to man. (Submitted to Nature Reviews Genetics).
Holtman C.K., Chen, Y, Sandoval, P., Gonzales, A., Nalty, M.S., Thomas, T.L., Youderian, P., and Golden, SS. High-throughput functional analysis of the Synechococcus elongatus PCC 7942 genome. DNA Research, in revision.
Menger, G.J., Lu, K., Thomas, T.L., Cassone, V.M., Earnest, D.J. Circadian profiling of the transcriptome on immortalized rat SCN cells. Physiological Genomics. In revision.
Gray, C.A., Abbery, C.A., Beremand, P.D., Choi, Y., Farmer, J.L., Adelson, D.L., Thomas, T.L., Bazer, F.W., Spencer, T.E. Transcriptional profiling of endometrial responses to eary pregnancy in sheep. Biology of Reproduction, Submitted.