BioProspector




It is highly recommended that you visit and read the documentation and the supporting paper (see below) before running BioProspector.

BioProspector requires that your sequences be in restricted FASTA format without any carriage returns within the sequence itself (A single CR between sequences is ok).  To make this easier, you may reformat your FASTA-formatted sequence to the required restricted format by running BPclean.

Once your sequences are correctly formatted, click here to run BioProspector.


Reference:  Liu X, Brutlag DL, Liu JS. BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac Symp Biocomput. 2001;:127-38.