BioProspector
It is highly recommended that
you visit and read the documentation
and
the supporting paper (see below) before running BioProspector.
BioProspector requires that your
sequences be in restricted
FASTA format without any
carriage returns within the sequence itself (A single CR between
sequences is ok). To make this easier, you may reformat your
FASTA-formatted sequence to the required restricted format by running BPclean.
Once your sequences are correctly formatted, click here
to run BioProspector.
Reference: Liu X, Brutlag DL, Liu JS. BioProspector: discovering
conserved DNA
motifs in upstream regulatory regions of co-expressed genes. Pac Symp
Biocomput. 2001;:127-38.