| ChickRetinana LD combined experiment |
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| Genes rhyththmic at 2-fold |
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| Gene ID |
Functional Cluster |
t-Test LD2 |
LD2 |
t-Test LD6 |
LD6 |
t-Test LD10 |
LD10 |
t-Test LD14 |
LD14 |
LD18 |
t-Test LD22 |
LD22 |
Description |
| gene5317 |
A |
0.10828442 |
2.18 |
0.054108642 |
1.62 |
0.07492247 |
1.27 |
0.0143146 |
1.43 |
1.21 |
0.08697973 |
1.78 |
ATP
synthase beta subunit - 4e-26 |
| gene3149 |
A |
0.12062322 |
2.48 |
0.03542413 |
1.84 |
0.01893606 |
1.31 |
0.00119615 |
1.69 |
1.13 |
0.7029971 |
1.83 |
ATP
synthase H+ transporting mitochondri |
| gene6488 |
A |
0.13550383 |
1.79 |
0.014021177 |
2.08 |
0.03167104 |
1.72 |
0.02846425 |
1.62 |
1.18 |
0.018543392 |
1.56 |
cytochrome
b [Gallus gallus] - 2e-76 |
| gene3859 |
A |
0.00426574 |
0.33 |
0.001582881 |
0.33 |
0.00366085 |
0.54 |
0.5847228 |
1.11 |
1.02 |
0.001244458 |
0.49 |
cytochrome
c oxidase subunit II [Gallus |
| gene47 |
A |
0.0257341 |
0.53 |
0.006761074 |
0.45 |
0.02620862 |
0.64 |
0.00927263 |
0.49 |
0.83 |
0.06149713 |
0.68 |
GCSP_CHICK
Glycine dehydrogenase [decarb |
| gene8372 |
A |
0.0046405 |
0.50 |
0.008272127 |
0.55 |
0.00889866 |
0.56 |
0.00791053 |
0.54 |
0.99 |
0.02752295 |
0.73 |
GCST_CHICK
Aminomethyltransferase mitoch |
| gene310 |
A |
0.01186315 |
0.46 |
0.14088257 |
0.81 |
0.14748633 |
0.79 |
0.06112216 |
0.62 |
0.95 |
0.016685843 |
0.62 |
JC5507
monocarboxylate transporter 3 - c |
| gene1359 |
A |
5.16E-04 |
1.62 |
7.17E-04 |
1.61 |
2.24E-04 |
2.03 |
0.01216795 |
1.44 |
1.05 |
0.034110513 |
1.33 |
LDHB_CHICK
L-lactate dehydrogenase B cha |
| gene8071 |
A |
0.00176446 |
2.00 |
8.99E-04 |
1.71 |
0.00348845 |
1.69 |
0.01346608 |
1.41 |
1.01 |
0.003235647 |
1.46 |
LDHB_CHICK
L-lactate dehydrogenase B cha |
| gene5443 |
A |
0.10316939 |
2.12 |
0.008739244 |
1.58 |
0.16242936 |
1.24 |
0.01449571 |
1.38 |
1.00 |
0.002401727 |
1.52 |
NADH
dehydrogenase (ubiquinone) 1 alpha |
| gene563 |
A |
0.10509753 |
2.16 |
0.003251729 |
1.67 |
0.04235279 |
1.34 |
0.09031636 |
1.47 |
1.36 |
0.005609138 |
1.60 |
NADH
dehydrogenase (ubiquinone) 1 alpha |
| gene4286 |
A |
|
2.15 |
|
1.33 |
|
1.14 |
|
1.18 |
1.46 |
|
1.38 |
NADH
dehydrogenase (ubiquinone) 1 alpha |
| gene2258 |
A |
0.03949214 |
1.94 |
0.07081567 |
2.01 |
0.00302968 |
1.46 |
0.01203641 |
1.60 |
0.78 |
0.03635472 |
1.58 |
ND4_10016
NADH dehydrogenase subunit 4 [ |
| gene8423 |
A |
0.09767789 |
2.07 |
0.04246978 |
1.92 |
0.02555776 |
1.52 |
0.02472612 |
1.65 |
1.22 |
0.006822197 |
1.74 |
ND4_10016
NADH dehydrogenase subunit 4 [ |
| gene2105 |
A |
0.10136908 |
1.76 |
0.00346651 |
2.25 |
0.03644428 |
1.48 |
0.00421795 |
1.66 |
1.12 |
0.001414964 |
1.71 |
ND4_10016
NADH dehydrogenase subunit 4 [ |
| gene282 |
A |
0.13671432 |
1.94 |
0.010661237 |
2.35 |
0.02854575 |
1.52 |
0.01281217 |
1.53 |
1.04 |
0.007255546 |
1.93 |
NU4M_CHICK
NADH-UBIQUINONE OXIDOREDUCTAS |
| gene7997 |
A |
1.08E-04 |
1.70 |
3.09E-04 |
2.09 |
1.42E-04 |
1.68 |
2.91E-04 |
1.74 |
1.09 |
0.08405949 |
1.24 |
phosphoglucose
isomerase [Boiga kraepeli |
| gene8576 |
A |
3.29E-05 |
3.31 |
1.23E-04 |
2.11 |
0.09690533 |
1.39 |
0.2984373 |
0.87 |
1.03 |
6.89E-04 |
2.29 |
phospholipid
hydroperoxide glutathione p |
| gene1823 |
A |
0.1838044 |
1.48 |
0.24805892 |
2.10 |
0.0227994 |
1.66 |
3.87E-04 |
1.77 |
1.11 |
0.8623322 |
1.08 |
PMCA2av
[Rana catesbeiana] - 3e-19 |
| gene185 |
A |
0.03299527 |
2.11 |
0.2609107 |
1.50 |
0.25832382 |
1.21 |
0.03440094 |
1.57 |
1.47 |
8.32E-04 |
1.62 |
PYRD_HUMAN
Dihydroorotate dehydrogenase |
| gene1549 |
A |
0.00260365 |
0.25 |
0.07901807 |
0.49 |
0.01082556 |
0.54 |
0.00626801 |
0.41 |
0.83 |
0.008064977 |
0.51 |
ribose
5-phosphate isomerase A (ribose 5 |
| gene1115 |
A |
0.03568874 |
0.50 |
0.027825272 |
0.57 |
0.04874754 |
0.62 |
0.01771355 |
0.46 |
0.80 |
0.038913812 |
0.70 |
ubiquinol-cytochrome
c reductase (6.4kD) |
| gene6352 |
B |
|
2.55 |
|
1.01 |
|
1.52 |
|
0.91 |
1.19 |
|
1.28 |
LRRGT00001
[Rattus norvegicus] - 007 |
| gene2482 |
B |
|
0.88 |
|
0.39 |
|
1.05 |
|
1.12 |
1.35 |
|
1.06 |
rcd1
(required for cell differentiation) |
| gene1551 |
C |
0.00190129 |
0.28 |
0.009056067 |
0.41 |
0.04746645 |
0.61 |
0.01228985 |
0.47 |
1.05 |
0.018551353 |
0.63 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene1553 |
C |
0.00346965 |
0.47 |
0.001710583 |
0.29 |
0.00234891 |
0.26 |
0.00187697 |
0.29 |
0.79 |
0.003094299 |
0.36 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene8203 |
C |
0.0039621 |
0.42 |
0.00349837 |
0.31 |
0.0015199 |
0.21 |
0.00320899 |
0.25 |
0.78 |
0.00192558 |
0.31 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene3725 |
C |
0.00443669 |
0.45 |
0.001960283 |
0.34 |
8.24E-04 |
0.24 |
0.00292757 |
0.29 |
0.96 |
0.001014666 |
0.41 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene5913 |
C |
0.00556246 |
0.50 |
0.003170802 |
0.33 |
0.00206901 |
0.23 |
0.0060168 |
0.34 |
1.03 |
0.006005351 |
0.41 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene6442 |
C |
0.00646921 |
0.42 |
0.006515059 |
0.39 |
0.00190206 |
0.25 |
0.00412184 |
0.27 |
0.93 |
0.005182756 |
0.50 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene4873 |
C |
0.01213222 |
0.59 |
0.002068223 |
0.40 |
0.0023299 |
0.32 |
0.00411514 |
0.39 |
1.04 |
0.006325254 |
0.54 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene8043 |
C |
0.012787 |
0.56 |
0.01740425 |
0.46 |
0.00346846 |
0.41 |
0.03309213 |
0.55 |
1.19 |
0.008479891 |
0.53 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene6496 |
C |
0.01427697 |
0.48 |
0.024866227 |
0.41 |
0.00290664 |
0.29 |
0.00202447 |
0.33 |
0.98 |
0.004223423 |
0.45 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene114 |
C |
0.0146846 |
0.59 |
0.008441347 |
0.39 |
0.00207498 |
0.41 |
0.00131772 |
0.36 |
1.00 |
0.013539466 |
0.52 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene2636 |
C |
0.01505614 |
0.56 |
0.003611157 |
0.46 |
9.57E-04 |
0.33 |
0.00222147 |
0.30 |
1.04 |
0.004162064 |
0.45 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene6149 |
C |
0.05702176 |
0.51 |
0.008658323 |
0.42 |
0.009009 |
0.29 |
0.05173597 |
0.33 |
1.36 |
0.030008035 |
0.48 |
HIOM_CHICK
Hydroxyindole O-methyltransfe |
| gene8524 |
C |
6.50E-04 |
2.63 |
1.92E-05 |
2.89 |
1.77E-04 |
2.62 |
0.00895543 |
1.52 |
1.12 |
0.20978406 |
1.41 |
TPH1_CHICK
Tryptophan 5-hydroxylase 1 (T |
| gene736 |
C |
0.00176798 |
0.30 |
9.18E-04 |
0.36 |
0.01207984 |
0.61 |
0.4237825 |
1.22 |
0.99 |
0.008842121 |
0.51 |
TPH1_CHICK
Tryptophan 5-hydroxylase 1 (T |
| gene4837 |
C |
0.00434765 |
0.36 |
0.004143628 |
0.33 |
0.00575592 |
0.54 |
0.01461569 |
1.36 |
1.02 |
0.004242417 |
0.49 |
TPH1_CHICK
Tryptophan 5-hydroxylase 1 (T |
| gene3848 |
C |
0.00526453 |
0.48 |
0.018430218 |
0.58 |
0.01538122 |
0.57 |
0.00889475 |
0.57 |
0.94 |
0.027353236 |
0.69 |
TPH1_CHICK
Tryptophan 5-hydroxylase 1 (T |
| gene425 |
C |
0.0186158 |
0.40 |
0.006803394 |
0.39 |
0.02404076 |
0.65 |
0.93415403 |
1.02 |
0.87 |
0.003682033 |
0.50 |
TPH1_CHICK
Tryptophan 5-hydroxylase 1 (T |
| gene3412 |
C |
0.03961849 |
0.53 |
0.014111969 |
0.41 |
0.13343087 |
0.75 |
0.39287555 |
1.46 |
0.96 |
0.08384485 |
0.49 |
TPH1_CHICK
Tryptophan 5-hydroxylase 1 (T |
| gene600 |
C |
0.3250646 |
0.86 |
0.009992113 |
0.50 |
0.2531984 |
0.80 |
0.03292866 |
1.38 |
1.27 |
0.024760364 |
0.67 |
TPH1_CHICK
Tryptophan 5-hydroxylase 1 (T |
| gene283 |
D |
0.09131388 |
1.54 |
3.27E-04 |
2.02 |
0.04353645 |
1.50 |
0.06780808 |
1.27 |
0.95 |
0.005756219 |
1.66 |
CAD2_CHICK
Neural-cadherin precursor (N- |
| gene1857 |
D |
0.14142053 |
0.65 |
0.040139448 |
0.47 |
0.81157696 |
1.04 |
0.42487022 |
0.85 |
1.01 |
0.13524374 |
0.64 |
NEO1_CHICK
Neogenin - 3e-06 |
| gene5131 |
D |
1.90E-05 |
1.73 |
1.25E-06 |
2.19 |
0.00147946 |
1.61 |
0.00110209 |
1.79 |
1.08 |
0.007607536 |
1.70 |
NEUS_CHICK
Neuroserpin precursor (Axonin |
| gene3706 |
E |
0.0012145 |
0.18 |
0.004838067 |
0.29 |
0.00561609 |
0.39 |
0.00177787 |
0.27 |
0.88 |
0.011699656 |
0.41 |
APA1_CHICK
Apolipoprotein A-I precursor |
| gene340 |
E |
0.00831243 |
0.27 |
0.011625052 |
0.31 |
0.00295577 |
0.44 |
0.00228358 |
0.29 |
0.85 |
0.007771509 |
0.39 |
APA1_CHICK
Apolipoprotein A-I precursor |
| gene2218 |
E |
0.00982901 |
0.37 |
0.006915408 |
0.45 |
0.01208998 |
0.59 |
0.0062513 |
0.43 |
0.86 |
0.019870143 |
0.47 |
APA1_CHICK
Apolipoprotein A-I precursor |
| gene3251 |
E |
0.01398457 |
0.46 |
0.013133839 |
0.56 |
0.02024875 |
0.71 |
0.01235727 |
0.45 |
1.32 |
0.03180941 |
0.51 |
APA1_CHICK
Apolipoprotein A-I precursor |
| gene5956 |
E |
0.01398457 |
0.41 |
0.013133839 |
0.45 |
0.02024875 |
0.53 |
0.01235727 |
0.39 |
1.15 |
0.03180941 |
0.55 |
APA1_CHICK
Apolipoprotein A-I precursor |
| gene95 |
E |
0.01727661 |
0.38 |
0.01639237 |
0.47 |
0.01453599 |
0.62 |
0.00533386 |
0.44 |
1.07 |
0.006326812 |
0.57 |
APA1_CHICK
Apolipoprotein A-I precursor |
| gene5903 |
E |
0.01887425 |
0.42 |
0.001469801 |
0.33 |
0.00687103 |
0.57 |
0.0081665 |
0.41 |
1.02 |
0.007185882 |
0.47 |
APA1_CHICK
Apolipoprotein A-I precursor |
| gene1413 |
E |
0.3756714 |
2.16 |
0.3434591 |
1.24 |
0.4217687 |
1.12 |
0.8225504 |
1.06 |
1.10 |
0.018790757 |
1.44 |
APA1_CHICK
Apolipoprotein A-I precursor |
| gene1249 |
E |
0.01087295 |
0.29 |
0.00437869 |
0.37 |
0.01133808 |
0.48 |
0.01359097 |
0.43 |
0.87 |
0.3402688 |
0.49 |
apolipoprotein
A-I - 1e-77 |
| gene3483 |
E |
0.00899823 |
0.31 |
0.001654162 |
0.33 |
0.00273824 |
0.43 |
0.00648345 |
0.31 |
0.97 |
0.74998695 |
0.52 |
apolipoprotein
A-I - 3e-24 |
| gene6692 |
E |
0.00149169 |
0.25 |
0.008311408 |
0.33 |
0.00272731 |
0.49 |
0.00323314 |
0.27 |
1.06 |
0.6799819 |
0.47 |
apolipoprotein
A-I - 9e-56 |
| gene849 |
E |
0.03455175 |
0.65 |
0.001930359 |
0.49 |
0.0074401 |
0.50 |
0.86801434 |
0.95 |
0.96 |
0.9219927 |
1.02 |
nuclear
antigen EBNA1 [Human herpesvirus |
| gene1121 |
E |
0.51145506 |
2.96 |
0.23827843 |
0.83 |
0.07541857 |
0.53 |
0.045782 |
0.54 |
1.17 |
0.16982298 |
0.82 |
small
EDRK-rich factor 1 short isoform [ |
| gene346 |
E |
0.04043017 |
0.34 |
0.09196186 |
0.63 |
0.10524486 |
0.71 |
0.04713488 |
0.54 |
0.71 |
0.03401871 |
0.47 |
Tce4
protein [Mus musculus] - 3e-77 |
| gene8695 |
E |
|
2.22 |
|
1.10 |
|
1.07 |
|
2.05 |
0.99 |
|
1.24 |
TRAP1
protein [Homo sapiens] - 3e-82 |
| gene1663 |
F |
0.00131873 |
0.27 |
3.95E-06 |
0.57 |
4.12E-04 |
0.83 |
0.04775945 |
0.50 |
1.09 |
0.035227254 |
0.69 |
Homo
sapiens insulin-like growth factor |
| gene6723 |
F |
0.00154654 |
0.39 |
0.015875965 |
0.62 |
0.20110224 |
0.83 |
0.02463582 |
0.53 |
1.00 |
0.08884288 |
0.71 |
Homo
sapiens insulin-like growth factor |
| gene4348 |
F |
0.00150887 |
0.31 |
0.0504585 |
0.64 |
0.13925388 |
0.81 |
0.01719695 |
0.59 |
1.11 |
0.14416538 |
0.77 |
insulin-like
growth factor binding prote |
| gene2340 |
F |
0.01383888 |
0.28 |
0.007811026 |
0.61 |
0.01437356 |
0.69 |
0.00799664 |
0.36 |
1.12 |
0.023553342 |
0.45 |
P11722_2
[Segment 2 of 2] Fibronectin (F |
| gene4868 |
F |
0.02092414 |
0.39 |
0.005933963 |
0.52 |
0.00839169 |
0.59 |
0.0035245 |
0.49 |
1.10 |
0.025189258 |
0.51 |
P11722_2
[Segment 2 of 2] Fibronectin (F |
| gene8094 |
G |
0.00593007 |
2.47 |
0.98608357 |
1.34 |
0.09973668 |
1.77 |
0.00249143 |
2.71 |
1.51 |
0.0359501 |
1.96 |
angiopoietin-2A
[Gallus gallus] - 8e-60 |
| gene1135 |
G |
0.01799983 |
2.07 |
0.01623549 |
1.38 |
0.27577904 |
1.59 |
0.5316506 |
0.90 |
1.05 |
0.5693133 |
1.23 |
CGD1_CHICK
G1/S-SPECIFIC CYCLIN D1 - 1e- |
| gene998 |
G |
0.3055509 |
1.47 |
0.020304417 |
1.85 |
0.08261549 |
2.44 |
0.07595395 |
1.59 |
1.17 |
0.56785554 |
1.31 |
cul-3
[Homo sapiens] - e-122 |
| gene2106 |
G |
0.01652922 |
2.22 |
1.84E-04 |
2.46 |
0.05422209 |
1.38 |
0.05788032 |
1.42 |
1.11 |
0.017153835 |
1.61 |
cyclin-dependent
kinase 2-interacting pr |
| gene762 |
G |
0.00436358 |
0.36 |
0.003864483 |
0.48 |
0.00104679 |
0.44 |
0.28902745 |
0.89 |
0.93 |
0.04266384 |
0.76 |
DCOR_CHICK
Ornithine decarboxylase (ODC) |
| gene4459 |
G |
0.02185098 |
0.49 |
0.027133353 |
0.69 |
0.12018023 |
0.83 |
0.09638897 |
0.74 |
0.95 |
0.05248965 |
0.77 |
I38591
ornithine decarboxylase antizyme |
| gene4804 |
G |
0.09728687 |
2.33 |
0.02217569 |
1.48 |
0.47513738 |
1.12 |
0.04123497 |
1.38 |
1.01 |
6.61E-04 |
1.93 |
similar
to novel cell death-regulatory p |
| gene7939 |
G |
|
1.01 |
|
2.79 |
|
1.05 |
|
1.11 |
1.04 |
|
1.10 |
truncated
EVI5 [Homo sapiens] - 3e-18 |
| gene7838 |
H |
0.00583494 |
0.40 |
0.007838755 |
0.42 |
0.00870515 |
0.59 |
0.00481446 |
0.50 |
1.06 |
0.014265412 |
0.56 |
A
Chain A Ovotransferrin C-Terminal Lobe |
| gene8060 |
H |
0.00292658 |
0.34 |
0.004400744 |
0.36 |
0.00567306 |
0.57 |
0.00574856 |